How To Install r-cran-sctransform on Kali Linux

In this tutorial we learn how to install r-cran-sctransform on Kali Linux. r-cran-sctransform is Variance Stabilizing Transformations for Single Cell UMI Data

Introduction

In this tutorial we learn how to install r-cran-sctransform on Kali Linux.

What is r-cran-sctransform

r-cran-sctransform is:

A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija 2019 doi:10.1101/576827 for more details.

There are three methods to install r-cran-sctransform on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.

Install r-cran-sctransform Using apt-get

Update apt database with apt-get using the following command.

sudo apt-get update

After updating apt database, We can install r-cran-sctransform using apt-get by running the following command:

sudo apt-get -y install r-cran-sctransform

Install r-cran-sctransform Using apt

Update apt database with apt using the following command.

sudo apt update

After updating apt database, We can install r-cran-sctransform using apt by running the following command:

sudo apt -y install r-cran-sctransform

Install r-cran-sctransform Using aptitude

If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.

sudo aptitude update

After updating apt database, We can install r-cran-sctransform using aptitude by running the following command:

sudo aptitude -y install r-cran-sctransform

How To Uninstall r-cran-sctransform on Kali Linux

To uninstall only the r-cran-sctransform package we can use the following command:

sudo apt-get remove r-cran-sctransform

Uninstall r-cran-sctransform And Its Dependencies

To uninstall r-cran-sctransform and its dependencies that are no longer needed by Kali Linux, we can use the command below:

sudo apt-get -y autoremove r-cran-sctransform

Remove r-cran-sctransform Configurations and Data

To remove r-cran-sctransform configuration and data from Kali Linux we can use the following command:

sudo apt-get -y purge r-cran-sctransform

Remove r-cran-sctransform configuration, data, and all of its dependencies

We can use the following command to remove r-cran-sctransform configurations, data and all of its dependencies, we can use the following command:

sudo apt-get -y autoremove --purge r-cran-sctransform

Dependencies

r-cran-sctransform have the following dependencies:

References

Summary

In this tutorial we learn how to install r-cran-sctransform package on Kali Linux using different package management tools: apt, apt-get and aptitude.