How To Install r-cran-pscbs on Kali Linux
Introduction
In this tutorial we learn how to install r-cran-pscbs on Kali Linux.
What is r-cran-pscbs
r-cran-pscbs is:
Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumoronly analyses are supported.
There are three methods to install r-cran-pscbs on Kali Linux. We can use apt-get, apt and aptitude. In the following sections we will describe each method. You can choose one of them.
Install r-cran-pscbs Using apt-get
Update apt database with apt-get using the following command.
sudo apt-get updateAfter updating apt database, We can install r-cran-pscbs using apt-get by running the following command:
sudo apt-get -y install r-cran-pscbsInstall r-cran-pscbs Using apt
Update apt database with apt using the following command.
sudo apt updateAfter updating apt database, We can install r-cran-pscbs using apt by running the following command:
sudo apt -y install r-cran-pscbsInstall r-cran-pscbs Using aptitude
If you want to follow this method, you might need to install aptitude on Kali Linux first since aptitude is usually not installed by default on Kali Linux. Update apt database with aptitude using the following command.
sudo aptitude updateAfter updating apt database, We can install r-cran-pscbs using aptitude by running the following command:
sudo aptitude -y install r-cran-pscbsHow To Uninstall r-cran-pscbs on Kali Linux
To uninstall only the r-cran-pscbs package we can use the following command:
sudo apt-get remove r-cran-pscbsUninstall r-cran-pscbs And Its Dependencies
To uninstall r-cran-pscbs and its dependencies that are no longer needed by Kali Linux, we can use the command below:
sudo apt-get -y autoremove r-cran-pscbsRemove r-cran-pscbs Configurations and Data
To remove r-cran-pscbs configuration and data from Kali Linux we can use the following command:
sudo apt-get -y purge r-cran-pscbsRemove r-cran-pscbs configuration, data, and all of its dependencies
We can use the following command to remove r-cran-pscbs configurations, data and all of its dependencies, we can use the following command:
sudo apt-get -y autoremove --purge r-cran-pscbsDependencies
r-cran-pscbs have the following dependencies:
- r-base-core
- r-api-4.0
- r-cran-r.methodss3
- r-cran-r.oo
- r-cran-r.utils
- r-cran-r.cache
- r-cran-matrixstats
- r-bioc-aroma.light
- r-bioc-dnacopy
- r-cran-listenv
- r-cran-future
References
Summary
In this tutorial we learn how to install r-cran-pscbs package on Kali Linux using different package management tools: apt, apt-get and aptitude.